I am reluctant to offer much advice because I have no experience with polyester resins.
Here is an excerpt from "The Epoxy Book" published by System Three epoxies:
"Caution must be observed when using epoxy resins along with
polyester resins
. Observe the general rule that epoxy resins may
be applied over cured polyesters that have been dewaxed and
well sanded but polyesters should never be used over cured epoxy
resins. Unreacted amine in the epoxy inhibits the peroxide cata-
lyst in the polyester causing an incomplete cure at the interface.
Sanding does not get rid of unreacted amine. The result is a poor
bond even though the surface appears cured. Debonding
will be
the inevitable result. "
The Epoxy Book is a fair resource for those working with epoxies:
http://www.systemthree.com/reslibrary/l ... y_Book.pdfIt may be that unreacted amines in the epoxy resin of your SR are interfering with the cure.
If you have no further structural issues to deal with what I would do is nothing for several weeks other than the keep the boat as warm as possible. For epoxy resins the cure rate slows after the resin leaves the liquid state and gels and cure may continue for several weeks. I assume the same might be true of polyester resins.
After a few weeks when the resin is presumably as cured as it is going to get I would wet sand the entire boat starting with 180 grit paper and proceeding in stages down to 600 grit or so. If you are painting the boat you don't need to go finer. I would then thoroughly wash and scrub the boat with soapy water, rinse, and go over the whole thing with denatured or isopropyl alcohol and a lint-free rag.
I would then apply a quality "Hi Build" marine primer such as thus made by Interlux or Z-Spar (Petit), and again wet sand and wash. The primer should fill in any low spots. Cover with a quality one or two part marine polyurethane paint. Don't worry about using conventional marine polyurethanes "beneath the waterline". Admonitions against using these paints below the waterline pertain to boats that reside in the water continuously for prolonged periods of time (weeks or months) which canoes usually don't.